The knockout of cytoglobin 1 in zebrafish (Danio rerio) alters lipid metabolism, iron homeostasis and oxidative stress response.

Cytoglobin (Cygb) is an evolutionary ancient heme protein with yet unclear physiological function(s). Mammalian Cygb is ubiquitously expressed in all tissues and is proposed to be involved in reactive oxygen species (ROS) detoxification, nitric oxide (NO) metabolism and lipid-based signaling processes. Loss-of-function studies in mouse associate Cygb with apoptosis, inflammation, fibrosis, cardiovascular dysfunction or oncogenesis. In zebrafish (Danio rerio), two cygb genes exist, cytoglobin 1 (cygb1) and cytoglobin 2 (cygb2). Both have different coordination states and distinct expression sites within zebrafish tissues. The biological roles of the cygb paralogs are largely uncharacterized. We used a CRISPR/Cas9 genome editing approach and generated a knockout of the penta-coordinated cygb1 for in vivo analysis. Adult male cygb1 knockouts develop phenotypic abnormalities, including weight loss. To identify the molecular mechanisms underlying the occurrence of these phenotypes and differentiate between function and effect of the knockout we compared the transcriptomes of cygb1 knockout at different ages to age-matched wild-type zebrafish. We found that immune regulatory and cell cycle regulatory transcripts (e.g. tp53) were up-regulated in the cygb1 knockout liver. Additionally, the expression of transcripts involved in lipid metabolism and transport, the antioxidative defense and iron homeostasis was affected in the cygb1 knockout. Cygb1 may function as an anti-inflammatory and cytoprotective factor in zebrafish liver, and may be involved in lipid-, iron-, and ROS-dependent signaling.

The More, the Merrier? Multiple Myoglobin Genes in Fish Species, Especially in Gray Bichir (Polypterus senegalus) and Reedfish (Erpetoichthys calabaricus).

The members of the globin superfamily are a classical model system to investigate gene evolution and their fates as well as the diversity of protein function. One of the best-known globins is myoglobin (Mb), which is mainly expressed in heart muscle and transports oxygen from the sarcolemma to the mitochondria. Most vertebrates harbor a single copy of the myoglobin gene, but some fish species have multiple myoglobin genes. Phylogenetic analyses indicate an independent emergence of multiple myoglobin genes, whereby the origin is mostly the last common ancestor of each order. By analyzing different transcriptome data sets, we found at least 15 multiple myoglobin genes in the polypterid gray bichir (Polypterus senegalus) and reedfish (Erpetoichthys calabaricus). In reedfish, the myoglobin genes are expressed in a broad range of tissues but show very different expression values. In contrast, the Mb genes of the gray bichir show a rather scattered expression pattern; only a few Mb genes were found expressed in the analyzed tissues. Both, gray bichir and reedfish possess lungs which enable them to inhabit shallow and swampy waters throughout tropical Africa with frequently fluctuating and low oxygen concentrations. The myoglobin repertoire probably reflects the molecular adaptation to these conditions. The sequence divergence, the substitution rate, and the different expression pattern of multiple myoglobin genes in gray bichir and reedfish imply different functions, probably through sub- and neofunctionalization during evolution.

Ecological specialization resulting in restricted gene flow promotes differentiation in door snails.

We tested the hypothesis that ecological specialization that affects dispersal promotes diversification by a comparison of the genetic structure of two sister species of door snails across their broadly overlapping ranges in the Crimean Mountains. The hypothesized effect of ecological specialization on diversification is supported by STRUCTURE analyses that showed that Mentissa gracilicosta that is restricted to limestone rocks, is subdivided into several distinct clusters, whereas all populations of the species adapted to more continuous habitat, the forests-dwelling Mentissa canalifera, were assigned to a single cluster. Furthermore, it is supported by AMOVAs that showed that a larger part of the genetic variation of M. gracilicosta is apportioned among populations than in M. canalifera. The stronger genetic differentiation of the M. gracilicosta populations corresponds to their more distinct morphological differentiation that resulted in the classification of M. gracilicosta into several geographical subspecies, whereas the more continuously distributed M. canalifera was not subdivided into subspecies. The stronger differentiation of populations of M. gracilicosta compared to M. canalifera can be ascribed to reduced gene flow between the isolated populations of M. gracilicosta and to founder events associated with the long distance dispersal events that are necessary for the colonization of isolated rocks by M. gracilicosta. In Central Europe, the Pleistocene climatic oscillations selected for species with high dispersal abilities, whereas the more stable climate in southern Europe facilitated the non-adaptive radiation of rock-dwelling door snails. Thus, the intrinsic ecological properties of these species groups contributed to the latitudinal diversity gradient.